PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148640.1
Common NameCsa_7G043020, LOC101205587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 438aa    MW: 47048.2 Da    PI: 7.8363
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31196254259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Cucsa.148640.1 196 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAlGCPVRKQVQRCAEDKTILITTYEGNHNHP 254
                     7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33180256IPR003657WRKY domain
SuperFamilySSF1182907.59E-28188256IPR003657WRKY domain
PROSITE profilePS5081129.516190256IPR003657WRKY domain
SMARTSM007745.1E-37195255IPR003657WRKY domain
PfamPF031069.5E-27197254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVDDGVSPNP EEKRVKNERA VLQAELERIN SENLRLKDML NQVTSNYQTL QMQFNTLIQT  60
QKTEDVGDPI EENPDGSGGG GNNNNNNNTN ISNKLVPRQF MDLGLATNTE NDEASMSSSE  120
GRSGERSRSP GNTGEVASSK RQSPDQSSNW GSNNNNNNNK VPKFSSSSGK EVDQTEATMR  180
KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMALGCPVR KQVQRCAEDK  240
TILITTYEGN HNHPLPPAAM AMASTTSSAA RMLLSGSMSS ADGLMNSNFL ARTLLPCSSS  300
MATISASAPF PTVTLDLTQT PNPLFQRPAT GHFPIPFAAA APPQTFPQIF GHALYNQSKF  360
SGLQMSKDME APQPPPPPQN PFTDTLSAAG AAIASDPNFI AALATAMTSL IGGSHHQKEN  420
GNGNSNVDNK TSSNSQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22182258176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658698.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-129WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A0A0K3J40.0A0A0A0K3J4_CUCSA; Uncharacterized protein
STRINGVIT_12s0059g00880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-102WRKY family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]